| Library | Collection | Collector | Content | Volume | Catalog |
| General Library | Akiba Collection | Akiba, Yoshimi (1896-1952) |
Shibai Banzuke(list of the title and the casts of the Kabuki presented on the stage) during the Empo-Meiji eras | 16,831 | Transcribed catalog (General Library's Reference Room) |
| Gakken Collection | Doi, Keizo (1866-1931) |
Japanese and Chinese medical books | 4,618 | Catalog of University of Tokyo General Library Old Medical Books (published in 1988) | |
| Hozumi Collection | Hozumi, Nobushige (1856-1926) |
Various edition and manuscripts of Goseibai-shikimoku and the commentaries | 1,053 | ||
| Books Illustrative of English Printing | British Gpvernment | Rare books illustrative of the history of English printing | 182 | Exhibition of books illustrative of the history of English printing and book production [General Library's Reference Room] | |
| Katei Collection | Watanabe, Katei (1864-1926) |
Japanese fictions in the Edo period | 1,851 | Catalog of Katei Collection (published in 1982) | |
| Morse Collection | Morse, Edward Sylvester(1831-1925) | Literatures on Japan and natural science | 1,200 | Card Catalog of the Collection [General Library's Reference Room] |
|
| Nanki Collection | Tokugawa, Yorimichi (1872-1925) |
Collection of Tokugawa, the feudal lord of Kii Province (including Yoshunro-bon, Sakata-bon, Gakkai-bon | 96,000 | Catalogue of the Nanki Bunko (published in 1914) 1914 | |
| Ogai Collection | Mori, Ogai (1862-1922) |
Biographical or historical books, Bukan(directory of Daimyo and Hatamoto), old maps in the Edo period, European literature | 18,700 | Catalog of Ogai Collection [General Library's Reference Rooms] |
|
| Rahder Collection | Rahder, Johannes Rahder (1898-?) | Literature on Indian philosophy, Sanskrit characters and westen philosophy | 1,300 | ||
| Seishu Collection | Watanabe, Makoto (1840-1911) |
Chinese classics and Japanese literature | 25,000 | Catalog of old versions of Seishu | |
| Tanaka Collection | Tanaka, Yoshio (1838-1915) |
Literature on medical plants, botany, zoology, agriculture, fishery, forestry | 6,000 | Catalog of books contributed by Baron Mitsuo Tanaka (published in 1936) | |
| Material on Forestry of Mito-Tokugawa | Tokugawa, Nuneyoshi (1897-1989) |
Material on forestry, etc. | 638 | Online Public Catalog ("Rinsei" file) | |
| Material of the Society of National Policy (Kokusaku kenkyukai bunsho) | Minobe, Yoji (1900-1953) |
Literature on politics and economic policy during the World War II | 6,624 | Online Public Catalog ("kokusaku" file) | |
| Faculty of Law | Taiwan Collection | Literature on civil law, etc. | 3054 | ||
| Yoshino Collection | Yoshino, Sakuzo (1878-1933) | Literature on history of modern Japanese politics | 8,716 | ||
| Gaikotsu Collection | Miyatake, Gaikotsu | Newspapers, magazines and books published by Gaikotsu Miyatake and his manuscripts | |||
| Faculty of Medicine | Kure Collection | Kure, Shuzo | Manuscripts on history of medicine | 160 | |
| Ribbert Collection | Ribbert, Hugo (1885-1920) |
Classical literature on medicine (chiefly on pathology) | 900 | Ribberts Bibliothek | |
| Waldeyer Collection | Wilhelm von Waldeyer- Hartz(1836-1921) |
Literature on anatomy, zoology and anthropology | ca. 2,000 | ||
| Faculty of Letters | (Dept. of Japanese Literature) Motoori Collection |
Motoori family | Own handwriting and transcription by Norinaga and his students/discples | 3,534 | Carad catalog on collections（Faculty of Letters） 2,167 items are stored in 1978, 79 and 80 versions of "Microform Catalogs held in National Institute of Japanese Literature" |
| Faculty of Economics | Adam Smith Collection | Smith, Adam (1723-1790) | Former library of Adam Smith | 312 | "Catalog of Adam Smith Library" by Tadao Yanaihara, 1951 |
| Engel Collection | Engel, Ernst (1821-96) | Former library of Ernst Engel | 1,124 | ||
| Menger Collection | Menger, Karl |
Part of former library of Karl Menger | 80 | ||
| College of Arts and Sciences | Old version of Edo Books | Horikiri, Morinosuke | Books published in Edo on literature | 237 | |
| Kitani Collection | Kitani, Hogin | Materials on Joruri in late Edo and Meiji | 228 | ||
| Kano Collection | Kano, Kokichi | Diaries, etc. of Kokichi Kano |